Some other useful references
We've covered some tools during this workshop that we often use in our workflows, but there are others that may suit your purposes better. We have listed some of them below, as well as some useful observations we have found when using the tools.
Finding Data
Quality Trimming and Evaluation
- Trimmomatic
- FastQC
- MultiQC
- CutAdapt -- Very good at removing polyA tails
- khmer - also many other functions