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Some other useful references

We've covered some tools during this workshop that we often use in our workflows, but there are others that may suit your purposes better. We have listed some of them below, as well as some useful observations we have found when using the tools.

Finding Data

Quality Trimming and Evaluation

Transcriptome and Metatranscriptome assembly

Assembly Evaluation

Annotation and Finding Genes

Read Mapping and Quantification

Handling Alignment files

Differential Expression

Variant Analysis

Taxonomic Classification

Amplicon Sequencing/16S analysis